Not Caloneis egena: morphological description and complete plastid and mitochondrial genomes of Caloneis paraegena sp. nov. from the Gulf of Tomini, Indonesia

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Sulastri Arsad, Romain Gastineau, Małgorzata Bąk, Mateusz Rybak, Ewa Górecka, Claude Lemieux, Monique Turmel, Fiddy Semba Prasetiya, Christopher S. Lobban

2026 Frontiers in Marine Science Vol. 13 Article Cited by 0 Quartile

Abstract

Introduction: Caloneis egena is a species of diatom originally described from Campeche Bay (Mexico) that is regarded as cosmopolitan, with several reports from the Pacific region. Methods: A strain of diatom from the genus Caloneis was isolated from the Gulf of Tomini, Sulawesi (Indonesia). It was subjected to an integrated approach combining microscopy, genomic analyses, and phylogeny. Results: Although looking similar to C. egena, the strain from Tomini was found to be a new species, hereby described as Caloneis paraegena sp. nov. The complete mitochondrial and plastid genomes were sequenced and annotated and represent the first organellar genomes made available for the genus Caloneis. The multigene phylogeny inferred from these results positions C. paraegena as sister to a clade that associates Caloneis fontinalis, C. silicula, and C. lewisii. Discussion: A survey of the literature dedicated to C. egena led to questioning its distribution, suggesting that records from the Pacific region might, in fact, represent C. paraegena based on morphology. Because of the absence of a molecular reference for C. egena, the exact relationship between these two species remains to be verified. Copyright © 2026 Arsad, Gastineau, Bąk, Rybak, Górecka, Lemieux, Turmel, Prasetiya and Lobban.

Affiliations

Doctoral School of the University of Szczecin, Szczecin, Poland; Institute of Marine and Environmental Sciences, University of Szczecin, Szczecin, Poland; Faculty of Fisheries and Marine Sciences, Universitas Brawijaya, Malang, Indonesia; Faculty of Biotechnology, Medical College, University of Rzeszów, Rzeszów, Poland; Département de biochimie, de microbiologie et de bio-Informatique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec City, QC, Canada; Research Center for Biosystematics and Evolution, Research Organization for Life Sciences and Environment, National Research and Innovation Agency (BRIN), West Java, Cibinong, Indonesia; Division of Natural Sciences, University of Guam, Mangilao, Guam